Lupus & antiphospholipid syndrome

Molecular Stratification of Antiphospholipid Syndrome Through Integrative Analysis of the Whole‐Blood RNA Transcriptome

Arthritis RheumatolPublished Cross-sectional study

Authors' conclusion

This study reveals four endotypes of aPL-positive patients

Study context

Population
aPL-positive patients
Participants
174 patients
Exposure
Primary antiphospholipid syndrome (APS) vs Secondary APS vs aPL positivity without classifiable APS
  • Primary APSn = 102
  • Secondary APSn = 29
  • aPL positivity without classifiable APSn = 43
Outcome
Distinct molecular endotypes (transcriptomic clusters) among aPL-positive patients
Methodological detailswhole-blood RNA sequencing, unsupervised machine learning, immune cell deconvolution
  • Whole-blood RNA sequencing
  • Unsupervised machine learning
  • Immune cell deconvolution

Main finding

As reported in the abstract

Transcriptomic clusters
Four transcriptionally distinct clusters identified
4

Observational data: associations, not effects.

Further findings

Clinical features by cluster

Cluster 4: higher IgG aCL and anti-β2-glycoprotein I positivity, elevated neutrophil counts, increased urine protein-to-creatinine ratios
Distinct immune pathway activations linked to white matter lesions, seizures and cardiac valve disease

Immune cell composition (deconvolution) by cluster

Cluster 1: lymphoid predominant
Cluster 2: balanced composition
Cluster 3: enriched in Treg cells, NK cells, macrophages, mast cells and memory B cells
Cluster 4: dominated by myeloid cells, incl. neutrophils, eosinophils and dendritic cells

Original publication

Molecular Stratification of Antiphospholipid Syndrome Through Integrative Analysis of the Whole‐Blood RNA Transcriptome. Arthritis Rheumatol. Published 13 February 2026. doi:10.1002/art.70021

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