Lupus & antiphospholipid syndrome

Development of a novel meta-polygenic risk score for risk assessment and clinical manifestation prediction in systemic lupus erythematosus

RMD OpenPublished Case-control genetic association study

Authors' conclusion

We developed the first metaPRS of SLE by integrating genetic characteristics from multiple SLE-related risk factors, offering a new perspective for risk stratification and early diagnosis.

Study context

Population
East Asian population; Systemic lupus erythematosus (SLE) patients and controls from the authors' own cohort
Participants
2,388 vs 1,132
Comparison
Meta-polygenic risk score (metaPRS) vs conventional PRS based solely on SLE risk genetic variants
  • Patientsn = 2,388
  • Controlsn = 1,132reference
Outcome
Prediction of SLE by metaPRS
Methodological detailspolygenic risk score, elastic net regression, internal validation via bootstrapping
  • Polygenic risk score
  • Elastic net regression
  • Internal validation via bootstrapping

Main finding

As reported in the abstract

metaPRS OR
2.12
metaPRS AUC
0.69
Risk stratification, high risk vs low risk, OR
4.93 (p<2e-16)
metaPRS vs conventional PRS: increase in OR
4.43%
metaPRS vs conventional PRS: improvement in AUC
p=0.046

Observational data: associations, not effects.

Further findings

Trait-level polygenic risk scores (PRSs) significantly associated with SLE

Five trait-level PRSs: SLE development, smoking initiation, serum selenium levels, endometriosis and Graves' disease
5

Clinical manifestations

metaPRS associated with positivity for multiple autoantibodies
Better performance in childhood-onset vs adult-onset SLE
Both PRSSLE and PRSriskfactor contributed to SLE susceptibility; clinical manifestations exclusively driven by PRSSLE

Original publication

Development of a novel meta-polygenic risk score for risk assessment and clinical manifestation prediction in systemic lupus erythematosus. RMD Open. Published 25 February 2026. doi:10.1136/rmdopen-2025-006380

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