Lupus & antiphospholipid syndrome

Enhanced B cell and complement cascade gene signatures in patients with neuropsychiatric systemic lupus erythematosus

Ann Rheum DisPublished Mechanistic study

Authors' conclusion

The clinical heterogeneity of NPSLE appears to be associated with molecular diversity, with certain endotypes or syndromes exhibiting distinct gene signatures.

Study context

Population
Patients with SLE (with and without neuropsychiatric systemic lupus erythematosus (NPSLE)) and matched healthy controls308 SLE patients
Participants
119 / 189 / 72
Comparison
NPSLE vs non-NPSLE SLE vs matched healthy controls
  • NPSLEn = 119
  • non-NPSLEn = 189
  • Healthy controls (HCs)n = 72reference
Outcome
Molecular (whole-blood transcriptomic) signature of NPSLE and its endotypes
Methodological detailswhole-blood RNA sequencing, supervised pathway enrichment analysis, unsupervised weighted gene coexpression network analysis
  • Whole-blood RNA sequencing
  • Supervised pathway enrichment analysis
  • Unsupervised weighted gene coexpression network analysis

Main finding

As reported in the abstract

Transcriptomic signatures
  • NPSLE vs HCs: dysregulated adaptive immune responses; upregulated IL-1, IL-6, IL-17 and IL-12/IL-23 signalling pathways
  • NPSLE vs non-NPSLE: robust upregulation of complement cascade, DNA damage response, adaptive immunity, and IL-1 and IL-6 signalling
  • Active NPSLE: strong autophagy signature
  • B cell and complement cascade signatures gradually upregulated across non-NPSLE, inactive NPSLE and active NPSLE
  • Diffuse syndromes correlated positively with the oxidative phosphorylation module
  • aPL-positive NPSLE not associated with specific signatures by unsupervised analysis
  • Endotype signatures: cognitive dysfunction – IL-6 signalling and leukocyte migration; seizures – DNA damage response; psychosis – inflammation; optic neuritis – type-I interferon

Original publication

Enhanced B cell and complement cascade gene signatures in patients with neuropsychiatric systemic lupus erythematosus. Ann Rheum Dis. Published 9 May 2025. doi:10.1016/j.ard.2025.04.006

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