Lupus & antiphospholipid syndrome

Unsupervised clustering of clinical and laboratory features of systemic lupus erythematosus: insights from a multicentre cohort

Lupus Sci MedPublished Multicentre cohort study with unsupervised clustering and multi-omics analysis

Authors' conclusion

We identified five SLE clusters with distinct clinical, immunological features and treatment outcomes, demonstrating an intrinsic link between clinical involvement and immune-inflammatory alterations.

Study context

Population
Systemic lupus erythematosus (SLE) patients from five teaching hospitals899 followed >1 year
Participants
1,065 patients
Exposure
Cluster 1 vs Cluster 2 vs Cluster 3 vs Cluster 4 vs Cluster 5
Outcome
Cluster size and defining feature
Methodological detailsunsupervised machine learning, multi-omics integration, prospective follow-up
  • Unsupervised machine learning
  • Multi-omics integration
  • Prospective follow-up

Main finding

As reported in the abstract

GroupValueRenal involvementCutaneous manifestationsNeuropsychiatric manifestationsanti-U1 RNP positivityCytopeniaDirect Coombs positivityCardiopulmonary involvement
Cluster 1 (renal)14.27%87.5%
Cluster 2 (mucocutaneous)39.53%72.45%
Cluster 3 (neuropsychiatric)14.74%96.18%42.04%
Cluster 4 (haematologic)22.63%95.85%87.55%
Cluster 5 (cardiopulmonary)8.83%97.87%

Value

Cluster 1 (renal)14.27%
Cluster 2 (mucocutaneous)39.53%
Cluster 3 (neuropsychiatric)14.74%
Cluster 4 (haematologic)22.63%
Cluster 5 (cardiopulmonary)8.83%

Renal involvement

Cluster 1 (renal)87.5%
Cluster 2 (mucocutaneous)— not stated in the abstract
Cluster 3 (neuropsychiatric)— not stated in the abstract
Cluster 4 (haematologic)— not stated in the abstract
Cluster 5 (cardiopulmonary)— not stated in the abstract

Cutaneous manifestations

Cluster 1 (renal)— not stated in the abstract
Cluster 2 (mucocutaneous)72.45%
Cluster 3 (neuropsychiatric)— not stated in the abstract
Cluster 4 (haematologic)— not stated in the abstract
Cluster 5 (cardiopulmonary)— not stated in the abstract

Neuropsychiatric manifestations

Cluster 1 (renal)— not stated in the abstract
Cluster 2 (mucocutaneous)— not stated in the abstract
Cluster 3 (neuropsychiatric)96.18%
Cluster 4 (haematologic)— not stated in the abstract
Cluster 5 (cardiopulmonary)— not stated in the abstract

anti-U1 RNP positivity

Cluster 1 (renal)— not stated in the abstract
Cluster 2 (mucocutaneous)— not stated in the abstract
Cluster 3 (neuropsychiatric)42.04%
Cluster 4 (haematologic)— not stated in the abstract
Cluster 5 (cardiopulmonary)— not stated in the abstract

Cytopenia

Cluster 1 (renal)— not stated in the abstract
Cluster 2 (mucocutaneous)— not stated in the abstract
Cluster 3 (neuropsychiatric)— not stated in the abstract
Cluster 4 (haematologic)95.85%
Cluster 5 (cardiopulmonary)— not stated in the abstract

Direct Coombs positivity

Cluster 1 (renal)— not stated in the abstract
Cluster 2 (mucocutaneous)— not stated in the abstract
Cluster 3 (neuropsychiatric)— not stated in the abstract
Cluster 4 (haematologic)87.55%
Cluster 5 (cardiopulmonary)— not stated in the abstract

Cardiopulmonary involvement

Cluster 1 (renal)— not stated in the abstract
Cluster 2 (mucocutaneous)— not stated in the abstract
Cluster 3 (neuropsychiatric)— not stated in the abstract
Cluster 4 (haematologic)— not stated in the abstract
Cluster 5 (cardiopulmonary)97.87%

Observational data: associations, not effects.

Further findings

OutcomeValues
Lupus low disease activity state · 1 yearCluster 2 (mucocutaneous) 46.42%

Lupus low disease activity state · 1 year

Cluster 2 had the highest proportions achieving low disease activity and tapering GC

CYC use and clinical improvement, Cluster 3 · 1 year

R
0.284
p
P = 0.023

RTX use and favourable response, Cluster 5 · 1 year

R
0.286
p
P = 0.019

Original publication

Unsupervised clustering of clinical and laboratory features of systemic lupus erythematosus: insights from a multicentre cohort. Lupus Sci Med. Published 8 April 2026. doi:10.1136/lupus-2025-001842

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